diagnostics_lineout_t Derived Type

type, public, extends(diagnostics_group_t) :: diagnostics_lineout_t

Class containing lineout diagnostics for the BRAGINSKII model


Contents

Variables

Type-Bound Procedures


Components

Type Visibility Attributes Name Initial
character(len=:), public, allocatable :: groupname

Name of diagnostics group
character(len=:), public, allocatable :: dirpath

Path to diagnostics directory
type(diagnostic_variable_t), public :: tau

Time
type(diagnostic_variable_t), public, dimension(:), allocatable :: diags

Container of non-generic diagnostic variables
integer, public :: n_diags

Number of non-generic diagnostic variables
logical, public :: file_exists

Internal flag to track snapshot file status

Type-Bound Procedures

procedure, public :: init_diagnostics_group

  • public subroutine init_diagnostics_group(self, comm_handler, groupname)

    Initialize diagnostic

    Arguments

    Type IntentOptional Attributes Name
    class(diagnostics_group_t), intent(inout) :: self

    Instance of class
    type(comm_handler_t), intent(in) :: comm_handler

    MPI communication handler
    character(len=*), intent(in) :: groupname

    Directory suffix to write snapsfiles into

procedure, public :: allocate_diags

  • public subroutine allocate_diags(self, n_diags)

    Initialize diagnostic

    Arguments

    Type IntentOptional Attributes Name
    class(diagnostics_group_t), intent(inout) :: self

    Instance of class
    integer, intent(in) :: n_diags

    Directory to write snapsfiles into

procedure, public :: write_diagnostics

  • public subroutine write_diagnostics(self, tau, isnaps, idiag, start_new_file)

    Write all diagnostics

    Arguments

    Type IntentOptional Attributes Name
    class(diagnostics_group_t), intent(inout) :: self

    Instance of class
    real(kind=GP), intent(in) :: tau

    Time
    integer, intent(in) :: isnaps

    Snapshot file index
    integer, intent(in) :: idiag

    Diagnostic step index
    logical, intent(in) :: start_new_file

    If true, a new file will be created

procedure, public :: init_next_diagnostic

  • public subroutine init_next_diagnostic(self, ndim, dimname, varname, ind_out)

    Initialize single diagnostic and provide pointer to its vals field

    Arguments

    Type IntentOptional Attributes Name
    class(diagnostics_group_t), intent(inout) :: self

    Instance of class
    integer, intent(in) :: ndim

    Number of elements in diagnostic
    character(len=*), intent(in) :: dimname

    Name of dimension of diagnostic
    character(len=*), intent(in) :: varname

    Name of diagnostic
    integer, intent(out) :: ind_out

    Index of initiated diagnostic in diags array

procedure, public :: init_lineout

  • public subroutine init_lineout(self, comm_handler, groupname, filepath)

    Initialize lineout diagnostic

    Arguments

    Type IntentOptional Attributes Name
    class(diagnostics_lineout_t), intent(inout) :: self

    Instance of class
    type(comm_handler_t), intent(in) :: comm_handler

    MPI communication handler
    character(len=*), intent(in) :: groupname

    Directory to write snapsfiles into
    character(len=*), intent(in) :: filepath

    Filepath to read lineouts parameters from

procedure, public :: process_to_file

  • public subroutine process_to_file(self, diag_packet, comm_handler, equi, equi_on_cano, equi_on_stag, mesh_cano, mesh_stag, map, penalisation_cano, penalisation_stag, polars_cano, polars_stag, tau, ne, te, ti, pot, vort, upar, jpar, apar, apar_fluct, neutrals_dens, neutrals_parmom, neutrals_pressure, isnaps, idiag, start_new_file)

    Main diagnostics computation routine

    Arguments

    Type IntentOptional Attributes Name
    class(diagnostics_lineout_t), intent(inout) :: self

    Instance of class
    type(diagnostics_packet_t), intent(inout) :: diag_packet

    Diagnostic packet
    type(comm_handler_t), intent(in) :: comm_handler

    MPI communication handler
    class(equilibrium_t), intent(in) :: equi

    Magnetic equilibrium
    class(equilibrium_storage_t), intent(in) :: equi_on_cano

    Equilibrium storage on canonical plane enabling faster performance at certain locations
    class(equilibrium_storage_t), intent(in) :: equi_on_stag

    Equilibrium storage on staggered plane enabling faster performance at certain locations
    type(mesh_cart_t), intent(in) :: mesh_cano

    Mesh (canonical) within poloidal plane
    type(mesh_cart_t), intent(in) :: mesh_stag

    Mesh (staggered) within poloidal plane
    type(parallel_map_t), intent(in) :: map

    Parallel map

    type(penalisation_t), intent(in) :: penalisation_cano

    Penalisation (canonical)
    type(penalisation_t), intent(in) :: penalisation_stag

    Penalisation (staggered)
    type(polars_t), intent(in) :: polars_cano

    Polar grid and operators (canonical)
    type(polars_t), intent(in) :: polars_stag

    Polar grid and operators (staggered)
    real(kind=GP), intent(in) :: tau

    Time
    type(variable_t), intent(in) :: ne

    Electron density
    type(variable_t), intent(in) :: te

    Electron temperature
    type(variable_t), intent(in) :: ti

    Ion temperature
    type(variable_t), intent(in) :: pot

    Electrostatic potential
    type(variable_t), intent(in) :: vort

    Generalised vorticity
    type(variable_t), intent(in) :: upar

    Parallel ion velocity
    type(variable_t), intent(in) :: jpar

    Parallel current
    type(variable_t), intent(in) :: apar

    Parallel electromagnetic potential
    type(variable_t), intent(in) :: apar_fluct

    Parallel electromagnetic potential fluctation
    type(variable_t), intent(in) :: neutrals_dens

    Neutrals density
    type(variable_t), intent(in) :: neutrals_parmom

    Neutrals parallel momentum
    type(variable_t), intent(in) :: neutrals_pressure

    Neutrals pressure
    integer, intent(in) :: isnaps

    Braginskii model snapshot number
    integer, intent(in) :: idiag

    Diagnostic snapshot number
    logical, intent(in) :: start_new_file

    Flag whether to write to new file

procedure, public :: project_lineout

  • public subroutine project_lineout(self, comm_handler, mesh, i_lineout, ind, u, mode)

    Project input onto lineout diagnostic dimension nrho

    Arguments

    Type IntentOptional Attributes Name
    class(diagnostics_lineout_t), intent(inout) :: self

    Instance of class
    type(comm_handler_t), intent(in) :: comm_handler

    MPI communication handler
    type(mesh_cart_t), intent(in) :: mesh

    Mesh within poloidal plane
    integer, intent(in) :: i_lineout

    Work index of lineout list
    integer, intent(in) :: ind

    Work index in diagnostics array
    real(kind=GP), intent(in), dimension(:) :: u

    Input array
    character(len=*), intent(in) :: mode

    Projection mode, select from : 'TORAVG' - toroidal average at each lineout point